NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066398_10002203

Scaffold Ga0066398_10002203


Overview

Basic Information
Taxon OID3300004268 Open in IMG/M
Scaffold IDGa0066398_10002203 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2011
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007671Metagenome / Metatranscriptome347Y
F022911Metagenome / Metatranscriptome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0066398_100022031F007671AGTAGVISPAVGSLGYTEGDLCRLREIAGGGTLESPEDVRRVIDNYQYLEDWRANYRIQSVRSSLWNSRITCIDAAILSYGLLELLCSQVKRRLLAIHRRDPKKDEECGHCVALYWGGDGRVGALSKSSFKGLGHRDPVFADEMAVASSYAKAYVDMGFQPLYFGVTTLEEAVPDLDWRFAEGDLNLISA
Ga0066398_100022033F022911N/ATLALSNFMRQAAREDILAYSICSAVLEGTTTDRRTYNPYYEKCAELYGVPKEAIAPIYAHLDLDVKYQHSDLFRDILQHVPEMSAERASKVLDYGHQLVEHIWLWTDNIEKYYQVESNPVPRRPFDIRVD*
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