NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066605_10001288

Scaffold Ga0066605_10001288


Overview

Basic Information
Taxon OID3300004279 Open in IMG/M
Scaffold IDGa0066605_10001288 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_10m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16635
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (85.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003051Metagenome / Metatranscriptome510Y
F004956Metagenome / Metatranscriptome417Y
F009521Metagenome / Metatranscriptome316Y
F066238Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0066605_1000128818F009521AGGMKYKLIINNGTLKGFTAFRGSCLVTMKDKYKRLTNQGHKLKLIRGK*
Ga0066605_1000128819F003051N/AMKTKILKNKTTIEMTTSEYDNLFKFINKLDSMLNTLHETNDLWLSDVHNLSSLKWELTKLLDAEWNPETYRYIKRGNK*
Ga0066605_100012887F004956AGGAGMKLISPNGKNSVIAQPLKVESFKNMGWKEEAIQSQDKVKPSSKKKSKDEVKENGDT*
Ga0066605_100012889F066238AGAAGMPMEFDRDFDGYLDATYGHGIKVTYTPTGGSSSSINVILNQEYVDIDTAGLPVQGYQPVAQSKTTDIPSIAFGDTIVAPAIKNLDGTQIKPSTTYKVINYEHDNLGMTSLLLEVQ*
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