NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066606_10185736

Scaffold Ga0066606_10185736


Overview

Basic Information
Taxon OID3300004280 Open in IMG/M
Scaffold IDGa0066606_10185736 Open in IMG/M
Source Dataset NameMarine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_100m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)757
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location NameBritish Columbia, Canada
CoordinatesLat. (o)48.6Long. (o)-123.5Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F057374Metagenome / Metatranscriptome136N
F087436Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0066606_101857361F057374N/AMNKVFLFILLLTSSLLSSQNFVGENFRLSTDSGNVVITFEDQNSDGTYIGGVLTKSFGKLTITKKEFQTKFIPNLKKISGKNDYEIVEDSYRLDKYSFDTESVFLQVGNKIGSITKEEIKKLRKL*
Ga0066606_101857362F087436N/AIPIGICIGIRIALLPSNPAIAGLLVGLGALGVIPMIWFSLATTYKRINAFFPNNAGWLLAATFVYSFILEAFNPQNALNVLDTPAPTLPNGDYITYLVLAIPSLIWSLYLLFGNSKVKKHIG*
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