Scaffold Ga0066599

Basic Information
Taxon OID	3300004282 Open in IMG/M
Scaffold ID	Ga0066599_100000166 Open in IMG/M
Source Dataset Name	Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0066599_100000166 Open in IMG/M

Source Dataset Name

Freshwater pond sediment microbial communities from the University of Edinburgh, under environmental carbon perturbations - Initial sediment

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9569
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (13.04%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9569

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (13.04%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater → Freshwater Pond Sediment Microbial Communities From The University Of Edinburgh, Under Environmental Carbon Perturbations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Pond → Sediment → Freshwater → Freshwater Pond Sediment Microbial Communities From The University Of Edinburgh, Under Environmental Carbon Perturbations

Source Dataset Sampling Location
Location Name	Crawford Collection of the Royal Observatory Edinburgh
Coordinates	Lat. (^o)	55.9232	Long. (^o)	-3.1878	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crawford Collection of the Royal Observatory Edinburgh

Coordinates

Lat. (^o)

55.9232

Long. (^o)

-3.1878

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001775	Metagenome / Metatranscriptome	636	Y
F029443	Metagenome / Metatranscriptome	188	Y
F036704	Metagenome	169	Y
F047062	Metagenome	150	Y
F049637	Metagenome / Metatranscriptome	146	N
F069672	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066599_10000016611	F036704	N/A	MWIEIEVMLNGSTMDWDALGLEVKHEFVRRMVRVKDVSYVQELVHDIQLIFFYDNTSCLIRGTYADIRDELIHLTEDEDFD*
Ga0066599_10000016612	F001775	N/A	MMDRKDLYTSALFFLGGLILGFLLLPRPETEEVYKFTSVTETDTIYLTSKDTIYVPKKEIKTEVLRDTILIDYKPQIKAFETSFPFEYGSTKVSGEVLGEVLKMTAINDYTIPVVTNTITNTETKTIIQKPKGIYLGAGVNSLLEPSAKVSYLDNKYLFSYQIEPMQRVHQISVSKKLF*
Ga0066599_10000016617	F069672	N/A	MRLIFILFLFFSVECHAQYYVMAAPNVAFNTKLQDTKNLFGGTIEVGKYFGDTAIGINSGWWTFDKKDFYQELMATFPIYERFSVSAAIGYFYHHKDITMEYDFNYTIPMDQGYSFVLSYGAQSAFGETFGAYSIGINKDFKIK*
Ga0066599_10000016621	F049637	N/A	MNLLKSDELGVPSTFLAMFANVTAMAGLQFVNVVFTSVISILSIIYLGYKLKHEIKKNQGNGEG*
Ga0066599_10000016622	F029443	N/A	MTLSNLIEKLKAIQEDHPMIRTFGEGDIYDYTDNGGEIVYPVFWTVVRPSQYSNMTMRYRLVLLFADLLTEDKSNRLQVQSDQLLVALDVLAKLKLDNDYNFNTQPQASVEFFQERFDDFTAGVSIEIEITSPMPLNLCQVPTT*
Ga0066599_1000001669	F047062	N/A	MSYKTENYFDQEIDFTYEGQDYIWCGDYTIETYGEDESEYAPAYGEVDVKIDHTSSLASYEDGIEITPTPSLLAAVEFQIERNL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0066599_100000166

Overview

Ecosystem & Geography

Associated Families

Sequences