Scaffold Ga0065202_1188457

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0065202_1188457

Scaffold Ga0065202_1188457

Overview

Basic Information
Taxon OID	3300004318 Open in IMG/M
Scaffold ID	Ga0065202_1188457 Open in IMG/M
Source Dataset Name	Marine microbial communities from Galveston Bay (MSEDA13C- fraction 7)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Shell Corporation
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1385
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Source Dataset Sampling Location
Location Name	Galveston Bay, USA
Coordinates	Lat. (^o)	29.5	Long. (^o)	-94.76	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050381	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065202_11884572	F050381	AGGAG	MKKLVVVVAIVLLPCIALASFSLKLDNNTGKKMVYMLYWIDHHYDWPYPFNMAGGELQARQTVDLRENLQTGKYCVIWNNKEGWQNKVMLDVNDTVKSVTVTPIKSRMNQ*

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