NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066234_101372

Scaffold Ga0066234_101372


Overview

Basic Information
Taxon OID3300004321 Open in IMG/M
Scaffold IDGa0066234_101372 Open in IMG/M
Source Dataset NameSediment microbial communities from the mangroves in Sao Paulo State, Brazil - MgvRC3B
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)630
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Sediment → Metatranscriptomics Studies In Sediment Microbial Communities From The Mangroves In Sao Paulo, Brazil

Source Dataset Sampling Location
Location NameSao Paulo State, Brazil
CoordinatesLat. (o)-23.8553Long. (o)-46.1394Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001233Metagenome / Metatranscriptome741Y
F001346Metagenome / Metatranscriptome718Y

Sequences

Protein IDFamilyRBSSequence
Ga0066234_1013721F001346AGGVKTFRGVGGVKNGTADLWTKGNLRVKRRDPWPRANALSRAAADPELNGEDAAKKTQTCLDLVRKPVAQP
Ga0066234_1013722F001233N/ARWKAAVERLRLHVSEIIPGDWGKVESGWLGQPLKSRIARSGGGGKIHQFLWRRSRAVSKREKGTER*

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