Scaffold Ga0065726

Basic Information
Taxon OID	3300004369 Open in IMG/M
Scaffold ID	Ga0065726_10984 Open in IMG/M
Source Dataset Name	Saline microbial communities from the South Caspian sea - cas-15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004369 Open in IMG/M

Scaffold ID

Ga0065726_10984 Open in IMG/M

Source Dataset Name

Saline microbial communities from the South Caspian sea - cas-15

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42180
Total Scaffold Genes	62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (74.19%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

42180

Total Scaffold Genes

62 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (74.19%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location Name	Caspian Sea
Coordinates	Lat. (^o)	41.916215	Long. (^o)	50.672019	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Caspian Sea

Coordinates

Lat. (^o)

41.916215

Long. (^o)

50.672019

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002444	Metagenome / Metatranscriptome	558	Y
F003196	Metagenome / Metatranscriptome	501	Y
F003423	Metagenome / Metatranscriptome	487	Y
F010091	Metagenome / Metatranscriptome	308	Y
F014085	Metagenome / Metatranscriptome	266	Y
F023355	Metagenome / Metatranscriptome	210	Y
F025614	Metagenome / Metatranscriptome	201	Y
F037248	Metagenome / Metatranscriptome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0065726_1098414	F037248	AGG	MFPEGMKPENPPTPFGNRKGKQPTLLTNVKVKVLLSMPGQWFNIGTRDKWISGVKANIESMTQSNISHLKDKGKFEIQQRKNDTGKVDIYCRFIQKSSDEEE*
Ga0065726_1098417	F010091	N/A	MITMNIEDMLAEAETGKRSAILDRITEEAKPFWQGCEERVIAGRQLKPFVVSRLLKEQFGIKISESAVRNHFQNLLTNE*
Ga0065726_1098426	F025614	AGGA	MKEKIDIDKINIFTNPKFMKVWATQFSQACGSDTFNVPPNTIKLRFLMDKFVKDYNWHLEQLEEE*
Ga0065726_1098429	F014085	AGGAGG	VDNLSKLRDEALKRANYACEWAYCGDKNWLELAHILGIGMGGRDKQSKFDINNVAILCKYHHDIYDGRRPNGSKRAYRDLLMGFLKRERQ*
Ga0065726_1098437	F023355	GGA	MPLPEAYVNNTPKIGQYCGNCEYYINNHCIKFNEQVASYGWCEAWESINEEQQMDTES*
Ga0065726_1098448	F002444	AGGAGG	MSILLMLKEGGSLGIDSIGLPIQEDLDLLPNAGGTLSYALRLSYEGLSITSVTQTSVRAIVMGDS*
Ga0065726_1098452	F003196	AGG	MQISKKVLIDVSEDASNSTGVQTDGLLLSGIVFPAAMTGTNVTFDFSFDGTTWVDVAETNNTEVTYNVSAGNVVRVDPSGWAFAAAGFLRVTSDGTEVADRSIQLIFKSS*
Ga0065726_1098454	F003423	GGAGG	MEEFDAPSENGVKQMRETIDRKDDTIKKLEAELASYKDKEINNVFGKLGLSTDKGFGKALKQVYDGPIDIESISQFAKDEYGFEANGYVEAQPQSQPKPTVQDDARARVAALDANSSSDVPKSLDEQLANVIRNGSVKDSLRARLTIMDQDKKNK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0065726_10984

Overview

Ecosystem & Geography

Associated Families

Sequences