NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065726_11899

Scaffold Ga0065726_11899


Overview

Basic Information
Taxon OID3300004369 Open in IMG/M
Scaffold IDGa0065726_11899 Open in IMG/M
Source Dataset NameSaline microbial communities from the South Caspian sea - cas-15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29120
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (26.19%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline → Saline Microbial Communities From The South Caspian Sea

Source Dataset Sampling Location
Location NameCaspian Sea
CoordinatesLat. (o)41.916215Long. (o)50.672019Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F091879Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0065726_1189939F091879N/AMTNDLMVMRYLKVQSGNGFSVDKYLNDYFPTREAYAVGGASDSCECVYNDDLSFNKFKSIMDLKIEFMMRQPDTTMQVIGAWVNWGGDAFIEVSDIVFDREEAIALGVERGEDSIWDFKNNCEIKMP*
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