Scaffold Ga0065861

Basic Information
Taxon OID	3300004448 Open in IMG/M
Scaffold ID	Ga0065861_1000343 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada BC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004448 Open in IMG/M

Scaffold ID

Ga0065861_1000343 Open in IMG/M

Source Dataset Name

Marine viral communities from Newfoundland, Canada BC-1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Yale University

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29599
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (18.60%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (25.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

29599

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (18.60%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, Canada
Coordinates	Lat. (^o)	47.593411	Long. (^o)	-52.885466	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Newfoundland, Canada

Coordinates

Lat. (^o)

47.593411

Long. (^o)

-52.885466

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016832	Metagenome / Metatranscriptome	244	Y
F020903	Metagenome / Metatranscriptome	221	N
F029278	Metagenome / Metatranscriptome	189	N
F030436	Metagenome	185	N
F038672	Metagenome	165	N
F043411	Metagenome / Metatranscriptome	156	N
F056150	Metagenome	138	N
F081203	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0065861_100034313	F038672	N/A	MDELDVMLRRNKLDIMIIKASAEVEKTNNKVKQEGLEVLMDILELIHDLQHEIRENHRVIAKLKYENAVAYKENAILKADFSKYKHNLINVELNSDKNG*
Ga0065861_100034321	F081203	GGA	MDKYEFYYRQKQEWDYWQSNQRHNFLSDRLLGIISQVQWNKVILKKTKLSDNDLEIHQNRFSNLITEVMKISIELKELAINYNPKRIQKIILILTKIKNYNNE*
Ga0065861_100034322	F016832	N/A	MSRTINYTTRTFYVPAEKLETLIKFQNKCKENGHRSYSEVILKLMENYNNG*
Ga0065861_100034341	F020903	N/A	MAEQLDIFGFDVDQLEEVKIDNPTTLSQVFNNIAADMVYCLKQSVKKEGLVYKGSLEDSIRMPVKMFGFRMIATLYLADYYDYLNQGVKGIGGTRKSGDKKGQGWVIKAPNSPYQFKRGPSVSHIEAWAKSKGLNEYAVRNSIARTGIKPRYFFDNCMKETFYGEAFNKFKTDIRIVSGERIAKGLKEILKK*
Ga0065861_100034343	F029278	N/A	MDITIPTKWEDVTIGNYINLRPVLNSKLNPIERVVNILAVLTGQKRDVIKNISLDQFKSIKKKMSFLETELPNKLKKKRFKIGGQWYEFKVDARKLLFGEYINTMEILQNAKDDQEAIFNNLHHILTTICRPVKKTVFGWKHIKVDSELLRETSDNFLNNMPITIAYPIGVFFYSHSEYLTKIIETSLTDLAKKMTKEAKVELDLLKSGGGGIH*
Ga0065861_10003435	F043411	GAG	MDLMKVAKIEKEMLKRRLTYNDKRVYIKSLGSNIAIVSHHKENDYKQFKVNIKDLVEFK*
Ga0065861_10003438	F056150	N/A	MDRKLIKKIENFIFWIGREYNVVELEDFKQDIFMILLNKGEDFILQLDKENSVKKYVYKLCLYQIISERGQYRTKYYIPSQFGSIEDIETYSNTCFKDQVLKDLINSLDGLDRIMMEQLLHCGGNKNCLADKSDIHRNTIQYKFKELANKIKQKWSLNEFYS*
Ga0065861_10003439	F030436	N/A	MKSTLNKIAEIIKEYKQTDVFDGNSLNKQLKELTAYLYYIETIRTKAHQNYEKVINDRVKEGFSVARATNEANVEVPEMYELRRLLESGYRVIDAMRTNISFLKSEMYNVTKEY*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0065861_1000343

Overview

Ecosystem & Geography

Associated Families

Sequences