NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065861_1005963

Scaffold Ga0065861_1005963


Overview

Basic Information
Taxon OID3300004448 Open in IMG/M
Scaffold IDGa0065861_1005963 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4706
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017488Metagenome / Metatranscriptome240Y
F052627Metagenome / Metatranscriptome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0065861_10059633F052627AGGMSKRTDLITQITTNIAAHSNVSISSDLPYDSAGDPLYEKNMNVIYVGEQDIAVDELYGTLDQGSVFQTTTTIPVYLSTDAKVQFDDIETIVANLLISRNVITGTIESDSSYETEISDDVITYSFEYNFITV*
Ga0065861_10059634F017488GAGGMAFITDGTGKVISFAEFTDVVQKDQRVLESNNLKIPAESGFADVTEFVEDMLEKSTNRLLLKIKASTWWQGYNAFVGAGISNINNLPSVNASLIDPGNLQGRRQQFTDMCVYYAFAEYLLPLIADFGNPESEETSKITYYNAKYNDLFNELLAIADWYDFDNSGTVDVDEKAVSYAPTRRSRSRRSITQVR*
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