NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0065861_1008908

Scaffold Ga0065861_1008908


Overview

Basic Information
Taxon OID3300004448 Open in IMG/M
Scaffold IDGa0065861_1008908 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada BC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9644
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (8.70%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, Canada
CoordinatesLat. (o)47.593411Long. (o)-52.885466Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000352Metagenome / Metatranscriptome1247Y
F000918Metagenome / Metatranscriptome834Y
F007772Metagenome / Metatranscriptome345Y
F008577Metagenome / Metatranscriptome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0065861_100890812F007772N/AMSTKSYQLLKISWNLYDTHFTKLTDEQKSKVWDIYYDFY*
Ga0065861_100890815F000352N/AMRNIELTEADCIFVHYVLRMYATQTANLDNQDKSEIREVAAKFK*
Ga0065861_100890818F008577N/AMKLTWEEIKEIANRLDEIVGNHFHEAMYDTIFEREGDEELEVTDEDILAIKEQLKRIL*
Ga0065861_10089089F000918N/AMYKTNQQCWDEVTRSIIESDRRTVICQEMFGQDNLIGLTNDQRDQFWSSI*
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