Basic Information | |
---|---|
Taxon OID | 3300004448 Open in IMG/M |
Scaffold ID | Ga0065861_1021664 Open in IMG/M |
Source Dataset Name | Marine viral communities from Newfoundland, Canada BC-1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Yale University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 4211 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (8.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Newfoundland, Canada | |||||||
Coordinates | Lat. (o) | 47.593411 | Long. (o) | -52.885466 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000918 | Metagenome / Metatranscriptome | 834 | Y |
F008577 | Metagenome / Metatranscriptome | 331 | Y |
F023446 | Metagenome / Metatranscriptome | 210 | Y |
F093896 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0065861_102166410 | F093896 | N/A | MNLTNHEQNLALVSLDHMEEHLFIIYEAGDITLDTYNLRMNSLKTVRTKIKQ* |
Ga0065861_102166412 | F008577 | N/A | MGNINTTKLTWEEIKDIANRLDEVVGNHFYDAMYGTIHDRPGDEEVLVSDEDIMLIKEQLKRIL* |
Ga0065861_10216644 | F000918 | N/A | MYQTNQQAWDEVTRSFNEARERTAICQQLFGQDNLKGLTDAQRDLFWESV* |
Ga0065861_10216649 | F023446 | N/A | MTKNVEFIDQLCELMGEGFFLCDQYDQDDLFTMQDSIAKLIANSANEGLGLAKYMVGKFPSTFQTS* |
⦗Top⦘ |