NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066224_1006075

Scaffold Ga0066224_1006075


Overview

Basic Information
Taxon OID3300004457 Open in IMG/M
Scaffold IDGa0066224_1006075 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada MC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20859
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (45.45%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Acionnavirus → unclassified Acionnavirus → Synechococcus phage S-CAM8(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, CA
CoordinatesLat. (o)47.65117Long. (o)-52.695961Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019759Metagenome228Y
F073480Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0066224_100607510F019759GGAGMIEPCQQTEFFMERLRRQSQGMSREELLVVVDSLSRLYCTTKAGANWLAKEAARNMTANC
Ga0066224_10060753F073480N/AMTGFKSEAGAAAHEQYMRTVYLDVLYELDGRDKPDHPFRGCYTGLFQQYGQKHDR*

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