Scaffold Ga0066224_1019692

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0066224_1019692

Scaffold Ga0066224_1019692

Overview

Basic Information
Taxon OID	3300004457 Open in IMG/M
Scaffold ID	Ga0066224_1019692 Open in IMG/M
Source Dataset Name	Marine viral communities from Newfoundland, Canada MC-1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Yale University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5548
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location Name	Newfoundland, CA
Coordinates	Lat. (^o)	47.65117	Long. (^o)	-52.695961	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F007985	Metagenome / Metatranscriptome	341	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0066224_10196929	F007985	N/A	MLDFPPHIQYNSCILKKREVTINMQQQQYKVNSKVFDSIESAGEYMLTLKHSATMEVYTPPSAESVKLSVVRNILIREMLEWAGSFVHSMAPSTDVCWMYSVEDANGFSDAGDTWYEDLEDVTYGNNLMWEDAKHDYESAVENFDCLFGDYNSVDTVEKLSDMLNSMYHTMSDHSSETDSYICEIRASVEKMCAVNPNIAHSYDHPSRTTTISFSGNVNSMYKAYMSDRNS*

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