NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066224_1124008

Scaffold Ga0066224_1124008


Overview

Basic Information
Taxon OID3300004457 Open in IMG/M
Scaffold IDGa0066224_1124008 Open in IMG/M
Source Dataset NameMarine viral communities from Newfoundland, Canada MC-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterYale University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1361
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada

Source Dataset Sampling Location
Location NameNewfoundland, CA
CoordinatesLat. (o)47.65117Long. (o)-52.695961Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003169Metagenome / Metatranscriptome504Y
F003920Metagenome / Metatranscriptome462Y
F053972Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0066224_11240082F053972GGAMIGFLVALFWFALALLAMGTVLAFLTSWREGCLGRDMREIKTGLAWVFLRIKKFTHRKK*
Ga0066224_11240083F003920N/AMLVRTLIIYAVMLTYALAFHDNTFAVFELKEELQIRYMNMWELFQQLEYVTDEQRAVVYAEIEHIKSEISTIIDQLLAHDRSQHP*
Ga0066224_11240084F003169GGTGGMAMIKYPLYKKNNSRNFTLVYPGLTTVSFDRIITYMQYYYVMCQKGSLVHRCYVQLDPESADILHDSLEQRYDLVQVCDVPRNSVEPDIVIAPAP*
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