Basic Information | |
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Taxon OID | 3300004457 Open in IMG/M |
Scaffold ID | Ga0066224_1124008 Open in IMG/M |
Source Dataset Name | Marine viral communities from Newfoundland, Canada MC-1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Yale University |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1361 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Viral Communities From Newfoundland, Canada |
Source Dataset Sampling Location | ||||||||
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Location Name | Newfoundland, CA | |||||||
Coordinates | Lat. (o) | 47.65117 | Long. (o) | -52.695961 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003169 | Metagenome / Metatranscriptome | 504 | Y |
F003920 | Metagenome / Metatranscriptome | 462 | Y |
F053972 | Metagenome | 140 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0066224_11240082 | F053972 | GGA | MIGFLVALFWFALALLAMGTVLAFLTSWREGCLGRDMREIKTGLAWVFLRIKKFTHRKK* |
Ga0066224_11240083 | F003920 | N/A | MLVRTLIIYAVMLTYALAFHDNTFAVFELKEELQIRYMNMWELFQQLEYVTDEQRAVVYAEIEHIKSEISTIIDQLLAHDRSQHP* |
Ga0066224_11240084 | F003169 | GGTGG | MAMIKYPLYKKNNSRNFTLVYPGLTTVSFDRIITYMQYYYVMCQKGSLVHRCYVQLDPESADILHDSLEQRYDLVQVCDVPRNSVEPDIVIAPAP* |
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