Scaffold Ga0063356_101155364

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063356_101155364

Scaffold Ga0063356_101155364

Overview

Basic Information
Taxon OID	3300004463 Open in IMG/M
Scaffold ID	Ga0063356_101155364 Open in IMG/M
Source Dataset Name	Combined assembly of Arabidopsis thaliana microbial communities
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1120
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Walnut Creek, California
Coordinates	Lat. (^o)	37.931388	Long. (^o)	-122.021761	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016698	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063356_1011553641	F016698	N/A	RQAQQDGKEVIRQMKRGLITWDKAELPPSVFETRLAKARQALAAQDLPALLVYTDVWRSTEGRHLTNFMPYWNRSLIVIPRDAAPILLCGLSPRVYPWIKSVTVFDEIRPASKLVPTLLQLCAERGWTKLGVLDLPRLPHEIHSPLEVSGVEASDVKLDLTDDAEIAMDRRAAQMAHEILTAELPHGAGLTDYQFAGRLERAFRRAGAEDLVLLFSTGESAPRPARGAMLGDRYSVAVALEYRGHWARVTQGLRL*

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