Scaffold Ga0063356_101293313

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0063356_101293313

Scaffold Ga0063356_101293313

Overview

Basic Information
Taxon OID	3300004463 Open in IMG/M
Scaffold ID	Ga0063356_101293313 Open in IMG/M
Source Dataset Name	Combined assembly of Arabidopsis thaliana microbial communities
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1066
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere → Arabidopsis Thaliana Rhizosphere Microbial Communities From The Joint Genome Institute, Usa, That Affect Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Walnut Creek, California
Coordinates	Lat. (^o)	37.931388	Long. (^o)	-122.021761	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F011424	Metagenome	291	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0063356_1012933133	F011424	N/A	LAVILLVTGVAVYTKMHRLAMSSEYRALMKSRRPLMNVIELKGWSYFPDESHPTEIRVSVAVHQSGRFAGNVTGEQTDSSGSATTIFESTNGTEIQRQVRSGEAFTYALRLKFLAAGHADDVRVTLYLFKAPSGPAAGDIAKVFVTSPQRDDDGEYFYGVLPPPSQAVK*

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