Scaffold Ga0068931_1293779

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068931_1293779

Scaffold Ga0068931_1293779

Overview

Basic Information
Taxon OID	3300004469 Open in IMG/M
Scaffold ID	Ga0068931_1293779 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 16 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	656
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location Name	Germany: Weissenstadt
Coordinates	Lat. (^o)	50.13	Long. (^o)	11.88	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005157	Metagenome / Metatranscriptome	410	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068931_12937791	F005157	GGA	MRLKSANEDFEANTLGAVPGLLGRLSYVGRLRGGNATTGNGRYEHWGLAKVYGDDAAQCAIRASHRALLFEVLKKPLAVLLKDVPESCSNEHLTEREFLASLTQCPPKPLSPAALAHLRSVLSALSALVESRDDANLRGASRPRQPAPEPRPPAGV*

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