NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062595_100337292

Scaffold Ga0062595_100337292


Overview

Basic Information
Taxon OID3300004479 Open in IMG/M
Scaffold IDGa0062595_100337292 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1041
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus → Paenibacillus sophorae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameWisconsin, United States
CoordinatesLat. (o)43.56Long. (o)-89.32Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F094491Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0062595_1003372921F094491AGGAGGMATKRLRGFAAFTAALLLLGCGNEQGAGGGAPKADAGAHKTVEAKPAPYAYPAPVKGHIKEVNIGEFDLVDGIAYPSMNGGGTVVYVASKPIASPMLVDSACPLTQARALAKLRNASFGEITLDAAGRSKYFSAGTPFGGSLNDLTPRDWSSTLKADAGRASGSVTHRQYGKYEFDLPLSTPKFDQISEGDRQQKRKLAATTPKPGAPAITAAYVALRDAALKKDLKAMLAALGFDSKQSAAIRGMDGIDADFLIFADRFLTPGTPGDPWDKPGAGQVRGEGVKASGKKYFNDYYFDSCGDRLVLTHIVEQSPP*

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