NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0069718_15973630

Scaffold Ga0069718_15973630


Overview

Basic Information
Taxon OID3300004481 Open in IMG/M
Scaffold IDGa0069718_15973630 Open in IMG/M
Source Dataset NameCombined Assembly of Gp0112041, Gp0112042, Gp0112043
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterThe National High-throughput DNA Sequencing Centre
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1414
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Urban Pond Sediment Microbial Communities From Copenhagen, Denmark

Source Dataset Sampling Location
Location NameCopenhagen, Denmark
CoordinatesLat. (o)55.685937Long. (o)12.574205Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004112Metagenome / Metatranscriptome452Y
F011844Metagenome / Metatranscriptome286Y

Sequences

Protein IDFamilyRBSSequence
Ga0069718_159736301F004112GGAGMIRGSESRKVDVYKQTRLLMFTMVRLMGDPKTAPKTPEALWELPGDEHSANVMSEDEMREIFKRLG
Ga0069718_159736303F011844N/AMGQILGSLQNVEIDVAGGTSYKNLVCLRTSSVNTTVDSTTEQTNCGPLTSVADATMGVDFDAICEVSPSVSQVSYEDLLAAMVGKTLVAVRVQNPVVSGSSAGAAYYHQFTGYITSLTLNQSTTEFINFSGTVTSTGIVDVTA*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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