NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049105_1030869

Scaffold Ga0049105_1030869


Overview

Basic Information
Taxon OID3300004630 Open in IMG/M
Scaffold IDGa0049105_1030869 Open in IMG/M
Source Dataset NameWorm MetaG Olavius vacuus BAHAMAS.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3879
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001963Metagenome610Y
F002880Metagenome523Y
F005143Metagenome410Y

Sequences

Protein IDFamilyRBSSequence
Ga0049105_10308692F002880N/AMRTLTINGVQLLDRIDPNHAFVTELGSVGCITWPQREHIIDIVHRRDRNDKLLEFLTRRSIADFQKFINVLAKEQAHLVPLLVTDGGETYYQHILFC*
Ga0049105_10308694F005143GAGVRQTEDRIVSQWREVSADEKHQLRDKIDEIVRPLGLQTRLVVLERAQSLALYFVCMTLAALMSLRDQWYSGQFRDIVQSLFTFLSDDSEIVDVHRLIWPLTDYQRCLVIFNSVQG*
Ga0049105_10308697F001963N/AMDLGQPRDIVACERTSQLYVADDEECVWRVSADGTDMKHWLPKSPDDSFKPWTLSVTSTRLLVTSRDTSQLRQFDADGDELRRVQLPYHMEPQHAVESPTGTFIIGLYNTQLKQNQVVEVNTGGEVLRQFSGSHLTSLGRTPHVAVDSHGNIFVADQDSRHILLLSAHLSLRRVIIDEHQLNCKPPYRLCYREDTGQLLVGFDYHSRDTNVVCLMCFVV*
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