Basic Information | |
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Taxon OID | 3300004631 Open in IMG/M |
Scaffold ID | Ga0058899_10131072 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1375 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Harvard Forest LTER, Petersham, MA, USA | |||||||
Coordinates | Lat. (o) | 42.531427 | Long. (o) | -72.189946 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003045 | Metagenome / Metatranscriptome | 511 | Y |
F032784 | Metagenome / Metatranscriptome | 179 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0058899_101310721 | F032784 | N/A | MRTRLLCAAGAVGLMTAIPVAHPASAQGLNDIVLNLNNTMNPNGAQRREDEARRDGRLEAGRYRDGDRPTSESREHNWDGGDRRTYGDRRDNAEGRQPTFSYR* |
Ga0058899_101310723 | F003045 | N/A | ARSEDRRIEGMDMPAIRGYVAAVVAALLALGSFTSYASAQGTNRTDVIIQLRLAGDVEALSPIRSCLADKLSQMPDVKVATLPTDGVRFIVDIVAAKKANEKISASLVVAEIFPMEEFRPRMKEGENADALLASIQYYTLLRLHEVVRARSYETLCLSIAADLGDKVLSKEYTERSD* |
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