NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0049107_10144209

Scaffold Ga0049107_10144209


Overview

Basic Information
Taxon OID3300004632 Open in IMG/M
Scaffold IDGa0049107_10144209 Open in IMG/M
Source Dataset NameMarine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius ilvae PIANOSA.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1678
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Annelida → Digestive System → Unclassified → Unclassified → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location
Location NameGermany: Marburg
CoordinatesLat. (o)50.8Long. (o)8.81Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019445Metagenome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0049107_101442091F019445N/AAAGSSCLYVSDIGSVAIWRVKAADNKVDQWLSEVRALTVLVTSEEKLVLLVWVDSQGSVGERNRTHYSEMHVYSSGAVKETVIKLSRDIFTSPWCAVMTTKKTFTVSYGDKWHEMNRVCEVDMTGHILKAFGSAPGEGVGQLNVPGHLSLDDEERIIVADCDNNRVLLLNKQLMLQRVLVTWNDPQSLTDDARRPVRLHYDRHSGRMLVGLVSGHVDIYQLRD*
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