NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0066395_10000146

Scaffold Ga0066395_10000146


Overview

Basic Information
Taxon OID3300004633 Open in IMG/M
Scaffold IDGa0066395_10000146 Open in IMG/M
Source Dataset NameTropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25648
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (77.78%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions

Source Dataset Sampling Location
Location NamePanama: Oeste
CoordinatesLat. (o)9.1086Long. (o)-79.8436Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034686Metagenome / Metatranscriptome174Y
F046542Metagenome / Metatranscriptome151Y
F061240Metagenome / Metatranscriptome132Y
F063867Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0066395_1000014614F046542AGGMASRSLPDQREGHPSRRHTSLASAVPKRGPQHSERDERLFGRLKRAIRQAERRSGDGSEIGGTGATNLRFLAAPLVRLIERKRIGTEEVRAADDIAIAFHAQAGALMIKSPSLEKRDATCHGREPVWIIDAVSRYKRWAHHWSQRARDGDRTLEIVIAAVVDERAFHAIEADVGIRHGMAARVVIAALRDYAARAGWTDRNTGAAWIKDAEAIFVRRQRSDV*
Ga0066395_1000014615F034686AGGAGMTQTAAIKLLNTATTTGDGSVFNLEFPQLAAAVQAEIAGAPTQAVVNVMALLDGGTWDTLCVLDTSQGYVSGEISPIIFPAPIRQIKGNVATLTGGTNPSVSLYFTARG*
Ga0066395_1000014620F061240GGAGMTKAKHDRLLVALLTKLPTAMAPWPRADRIAWLQMTAMAFDVIYGPCGGVRVIAGEACDGKIDQTAPTQHSRIEAAPPSAPRRFYVDRDGFAMGDGKPISMEELPAGAIVWDERAGAECGDVTAILWRDVGTSRRGLPPDVTLRPVFEAS*
Ga0066395_100001467F063867AGGMRGIILFVTGLGIVFLASAVQTYGTNWLGQTCPYPGPCFHPEWLAVGVVLSAAAYVAWKLVDRSRR*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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