NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007754_1112074

Scaffold Ga0007754_1112074


Overview

Basic Information
Taxon OID3300004764 Open in IMG/M
Scaffold IDGa0007754_1112074 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)976
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → unclassified Chthoniobacter → Chthoniobacter sp. 12-60-6(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013788Metagenome / Metatranscriptome268Y

Sequences

Protein IDFamilyRBSSequence
Ga0007754_11120742F013788N/ATKPAIINKTAAVAMAAGIVSGYVGEIAPELSASLKRKADKCIYSQIIPAQLEDGFWHYSLLDKDPKDKDVLGYFMLTTKELMDLQKFNPTFREEKLTAAVKKAQAFALKHIAPMTDPNTGTSTSEHATRGTPTHYAIKEDLKRSFQLGLVLIGGGHTDEGIKIMTTALDHFPIGNAGQDGAHAAEPSALILSGF*
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