NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007804_1024856

Scaffold Ga0007804_1024856


Overview

Basic Information
Taxon OID3300004770 Open in IMG/M
Scaffold IDGa0007804_1024856 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Aug07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1644
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034419Metagenome174Y
F072911Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0007804_10248561F072911AGCAGGVGNKSSESWGYVIAIIVLALLFVLILPVIGIMYMDIHQERILISNDLKRIEKLKKELEREKEKREE*
Ga0007804_10248562F034419GAGMYNEGKAVVKDVQKTIGEVKQIGKEVSGLFGWFKKLFAEPAPDLGNTQDVKPKKKEKVKFDEQAIYTEIGDQLVSFFKNYKACADAIRTEEERIEKIYDPDGETYEVAIRLVMAKTQLEDMRVNLTEFMIYHVPPELKDLYSRVNDMIGTVKTKQEIARKAELRKKAQRDAEARELADRAWLMSACTVVVIFIAIYLAGLMWAINRVSHGVM*
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