NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007798_10007267

Scaffold Ga0007798_10007267


Overview

Basic Information
Taxon OID3300004775 Open in IMG/M
Scaffold IDGa0007798_10007267 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA17M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2674
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026558Metagenome197Y
F064722Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0007798_100072671F064722N/AVRHYNYLQMRSGNRAFIEEQKRIISPLKFNQDYMCQWESVSDAFYYTWDKTKYTKEINDRGGDLYTFHDFNKRVMCATVAQVHKSGDKNGTIEILKSYAIPDCSTEGIAQSIRMDFPKRRINSIIDMSGTQVNRDTTSPFGVTDRIILEKYGFTIVNSRKVNPLVSDTDNTANAFINRGGLVVKPDDKFLLEALQTYHFEDGTRKRLVKYTEQKYAHIDGLGDCIRYGIHHLFPITHDSLPIKEYIGMDPRLQSRITPGLEHMPDSPLYPGGPTWEEIMNDNLQQDHQVWQ*
Ga0007798_100072673F026558GAGMKNSQLLKRSSVYSAIYQQMLGYQNAYLGGYIFKQDVRKKRPSEDSVLWNDLVKNTVAQPICRYIVDTINDVLFEPGVKRNLKFATPQGQYINPENCDWVDLFVEDVDLQTRSLTSFMEQVGDLTSIFGHCWIAVDMPQEDEGNLGRPYVCAISPLDVWDWHFDFYGGKPILEYVKIKEMEDEHNFYLKCYHLGDANTPSRWESYEVPKSVKESSLMDNEAFMTGSGDFPAGMSIPVFIAFGRKDPRTFDLGVSDIDSASDAQREHYKMECEKYTALQFAHTIIRAEKGISVPVHAGAIVRAVAGQIEAISVDTGDVDKIIKSQMDILEQIEALTGLGGMRTSKNQVASGVSIIEERKQLHRTAKSKARLMEVTEGLIFTYAARYMGMRWAGQISYNTDYEAHDTNYRMALIQQAQAMVGDSDIVKALVTREIIGMLAPAED
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