NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0062378_10029422

Scaffold Ga0062378_10029422


Overview

Basic Information
Taxon OID3300004780 Open in IMG/M
Scaffold IDGa0062378_10029422 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare1Fresh
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1107
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment → Wetland Sediment Microbial Communities From St. Louis River Estuary, Michigan Under Dissolved Organic Matter Induced Mercury Methylation

Source Dataset Sampling Location
Location NameUSA: Michigan, St. Louis River estuary
CoordinatesLat. (o)46.6972164Long. (o)-92.3279105Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072004Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0062378_100294221F072004GAGMANIHSALLTFTHSLVTALGFRLLPAWHPAPAQSPLHNVPRGPLLQGGLTPLFALTTSCANPKASVQLRFYTRWSVFAAWTIRCWSLGPSRRYLTRTFPWMLGPLPRLSRWCLFPFLPTELRPSRNGYAVGSFANIRTTTSVRTVISGLQSFLYVQASKFACHPGRSYRWRFRVQGSCDFYFRAPCVSLPSRTSDMLAVRIGQLTAGDFHPIRFATLSAASNRFNGSSLAGSRETVGNGSRSFSPT*
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Institute for Fundamental Biomedical Research
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