NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007763_10687856

Scaffold Ga0007763_10687856


Overview

Basic Information
Taxon OID3300004796 Open in IMG/M
Scaffold IDGa0007763_10687856 Open in IMG/M
Source Dataset NameMetatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1126
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041782Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0007763_106878561F041782N/ALIFSLECCTVVLYWALSNWELLPFWYATGLCWFLQWVLGIQNIYILHDVIHGATFPPYEWQNYITHPWADFISIPWMDIIMEHNRHHNSTFDLLNHNEFGWDPANWLYTLQEWTMDWRSWFTCLLLPFWHMAGANDTGFLFACLWWLNFPDAGPGGKCDKGFYSKWLPVRLKHLCFLACIWGSTWLLGSIGLGRPLSEGWRFVLTVSLGFRMGFATAWIFIANINHSHTWNEFLATDPERSWPMLHNFMAFCLGGKHRWNEMLFHDVHHMCPGRIGAMSQRGRFHGWQKVHDACVELLARGLWVSEDADTKMVEHQKRRSLVMKSRK*
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