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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300004796 Open in IMG/M |
| Scaffold ID | Ga0007763_11660727 Open in IMG/M |
| Source Dataset Name | Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (Metagenome Metatranscriptome) |
| Source Dataset Category | Metatranscriptome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1704 |
| Total Scaffold Genes | 3 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Michigan, USA | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F011761 | Metagenome / Metatranscriptome | 287 | Y |
| F032663 | Metagenome / Metatranscriptome | 179 | Y |
| F079960 | Metagenome / Metatranscriptome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0007763_116607271 | F032663 | AGGA | MSVPYQRVSNATVQDIIFYDPAAERRASQMQVNWDDYFKVGSQEILYQLEFGWWQKYCDTVLGATYYTNLPNGALISSFNPSLLIKSDQTLIRLDTFMA |
| Ga0007763_116607272 | F011761 | AGGAG | MAYVLGGGNNEADGFTTAIANFALRAMHESTGLVEFTQVVAPNQGNQYLVPNFAPITYQDYNPAGSSGGDGFGTPPLAVEQNPALGQGSITATPAVAATAFDVFYAWTTSFELAATLGAELGESYGEKVDIRVCEAFLSFKVSPGNTNYSPTPADGFARPTQLGAMEVIGATNTSGTWTMGFTSNTILGLVRNVKQNYKTARLPGTPIIVLDSNGDAQTQSGYTGDQVGSSLNRMLAELTGGAVSQTGGSNLSNLGNELLSTGRIESVYGCMVVFTTFLSSAVRTVVGQTSLPVLVGGYFHETAIFTVLKEGLQIKMGEKPGGLQMWLTGLAYMGAGVADPRRGGAINILQE* |
| Ga0007763_116607273 | F079960 | N/A | QKGQERYGMDGNPLSLKGLVEEVAQGNPKLLKQNSLSSGSGLRPGQSQFAGAPPDQIPDYSKDPAAFNAWAQRNGLGKRVGLKATGVTATVSTASRKIV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |