Basic Information | |
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Taxon OID | 3300004796 Open in IMG/M |
Scaffold ID | Ga0007763_11660727 Open in IMG/M |
Source Dataset Name | Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1704 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Michigan, USA | |||||||
Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F011761 | Metagenome / Metatranscriptome | 287 | Y |
F032663 | Metagenome / Metatranscriptome | 179 | Y |
F079960 | Metagenome / Metatranscriptome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0007763_116607271 | F032663 | AGGA | MSVPYQRVSNATVQDIIFYDPAAERRASQMQVNWDDYFKVGSQEILYQLEFGWWQKYCDTVLGATYYTNLPNGALISSFNPSLLIKSDQTLIRLDTFMA |
Ga0007763_116607272 | F011761 | AGGAG | MAYVLGGGNNEADGFTTAIANFALRAMHESTGLVEFTQVVAPNQGNQYLVPNFAPITYQDYNPAGSSGGDGFGTPPLAVEQNPALGQGSITATPAVAATAFDVFYAWTTSFELAATLGAELGESYGEKVDIRVCEAFLSFKVSPGNTNYSPTPADGFARPTQLGAMEVIGATNTSGTWTMGFTSNTILGLVRNVKQNYKTARLPGTPIIVLDSNGDAQTQSGYTGDQVGSSLNRMLAELTGGAVSQTGGSNLSNLGNELLSTGRIESVYGCMVVFTTFLSSAVRTVVGQTSLPVLVGGYFHETAIFTVLKEGLQIKMGEKPGGLQMWLTGLAYMGAGVADPRRGGAINILQE* |
Ga0007763_116607273 | F079960 | N/A | QKGQERYGMDGNPLSLKGLVEEVAQGNPKLLKQNSLSSGSGLRPGQSQFAGAPPDQIPDYSKDPAAFNAWAQRNGLGKRVGLKATGVTATVSTASRKIV* |
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