Scaffold Ga0058859_11634096

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0058859_11634096

Scaffold Ga0058859_11634096

Overview

Basic Information
Taxon OID	3300004798 Open in IMG/M
Scaffold ID	Ga0058859_11634096 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	658
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium Broad-1	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Switchgrass Rhizosphere And Bulk Soil Microbial Communities From Kellogg Biological Station, Michigan, Usa For Expression Studies

Source Dataset Sampling Location
Location Name	Kellogg Biological Station, Michigan, USA
Coordinates	Lat. (^o)	42.3912	Long. (^o)	-85.383786	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048165	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058859_116340961	F048165	N/A	SSLLALALSALTASACLVQVRVACPNDRTAAGIKVCINGVGCAYTDNLGIASILVPELGQYTICVDASTLPAGATLTPKCQRVKVETEAPPVVEFVLGGSFCGEVPPQGQCWLTGGGTVFKDKGTPNYSFGGVVYPGCSPTAADGGNWNVVDHYLGLHFQGRTIIVDSCSGVSTRSPRVNVNIIDFHGVGILGGIGGNPDATIPVTFIGRCVDNLEPGG

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