Basic Information | |
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Taxon OID | 3300004800 Open in IMG/M |
Scaffold ID | Ga0058861_11440532 Open in IMG/M |
Source Dataset Name | Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 699 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Switchgrass Rhizosphere And Bulk Soil Microbial Communities From Kellogg Biological Station, Michigan, Usa For Expression Studies |
Source Dataset Sampling Location | ||||||||
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Location Name | Kellogg Biological Station, Michigan, USA | |||||||
Coordinates | Lat. (o) | 42.3912 | Long. (o) | -85.383786 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F104856 | Metagenome / Metatranscriptome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0058861_114405321 | F104856 | N/A | SLRESAMRKLFGIAIVLITVALPAFAQYRQWQQWNLSSDDQRRFDSYFSRWQDSRQRNDHDEMISMEKRMLDIYRHYNVPAQTPFWRVSSNARSGQNSWRGKLASDDQGRFDSYFSRWQDYRQRNDVDQIRSMEKRMQDVYAHYRIPPRTPYFWVASNAGDRDWDSWEADRWRGRLSPDDQRRFDSYYSRWLDYRRTNNRSEMSSMERRMQEVMSHYEIPPAIPYEQIASR* |
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