Scaffold Ga0058861_11630017

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0058861_11630017

Scaffold Ga0058861_11630017

Overview

Basic Information
Taxon OID	3300004800 Open in IMG/M
Scaffold ID	Ga0058861_11630017 Open in IMG/M
Source Dataset Name	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	742
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. CH12i	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Switchgrass Rhizosphere And Bulk Soil Microbial Communities From Kellogg Biological Station, Michigan, Usa For Expression Studies

Source Dataset Sampling Location
Location Name	Kellogg Biological Station, Michigan, USA
Coordinates	Lat. (^o)	42.3912	Long. (^o)	-85.383786	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039030	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0058861_116300171	F039030	AGGAG	MREFATLYPPEDIAVDEAPIVRGPDGPWDEDEIIDTVLRLVADHHRTIGAAIGRRSFSPSLAELRQSPLGQDLRLLAMAAYGDVDDDDVQERAGRVTDLLLRPLAAEHFVIPAWFWTTAIGRIVARAARASYGTESLMPLAEAARRLGVDPALIERWVSDGGIAAIPDEAGQLLVPRDEIERRRLLARELAGWQSDKGEDVLVQERRLAS*

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