NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007796_10001036

Scaffold Ga0007796_10001036


Overview

Basic Information
Taxon OID3300004804 Open in IMG/M
Scaffold IDGa0007796_10001036 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - MA0M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10070
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (45.45%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055453Metagenome138Y
F097281Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0007796_1000103614F097281N/AMTKQTQKVIPVNLKEQNAVHTFRVVIRDREHFYRLVKWLNENVGKGEDKWTMEGRVLKRLKQGASVNPNIYIFRTDFDPSSALYLSLI*
Ga0007796_100010363F055453N/AMSSFWINNTMKIKDIINESATDLVARFYKEASADSDRFYNLENVKYKEKNAKYYDKHFNEWFKEDIIPVFTKPLDKPQKSYNTVPQGSKLQSPGYRGLQYTLAAAGIPYNKNVQKYNPAAPAITSHEMDAARNNNSQ*
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