Scaffold Ga0007792_10054245

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0007792_10054245

Scaffold Ga0007792_10054245

Overview

Basic Information
Taxon OID	3300004805 Open in IMG/M
Scaffold ID	Ga0007792_10054245 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA6M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1215
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019099	Metagenome	231	Y
F023293	Metagenome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007792_100542452	F019099	AGGAG	MIINNKIVKDWDKSQISTGYQKPNQFRIITWDMGRVQGWLLGKQPLARSLIEKVIR*
Ga0007792_100542455	F023293	N/A	KYGILDDEGRVVRWVWSVPPYPHVAVKVPRSRKPKIDLSGVPDAPF*

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