NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007854_10000919

Scaffold Ga0007854_10000919


Overview

Basic Information
Taxon OID3300004806 Open in IMG/M
Scaffold IDGa0007854_10000919 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19106
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042703Metagenome / Metatranscriptome157N
F066390Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0007854_100009196F042703GAGMKPDTSTPNPVHLAIVSPCSSCQNQLTVSHDGMPACPRRVAQQNIQYMQSAGIDTTGVQHLALYGSEGAAQAGNGSYLNPVYSDNLHAILIWIALLEDNGGVLDSQGNQLCPNLLDPSFNTSYIQCHSLPVTTRDNEAVYFQKGAFAANDQLEVTLSARQQMTTDGSALPVLIDGFAQKVNFIFNHPRTPLNKDLCPAGC*
Ga0007854_100009199F066390GGAMAVDFRWMSRGGVLLDSTGDVSFTQSPWECLRSMANSRLKAAFDGWKSYQIGADLENVIGSTVAAELETTIQRQVESSMSQDFLPMGSFTVSTLKVGNQAYQVFVFIQNQLVASTTVSTPAST*
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