Scaffold Ga0007854

Basic Information
Taxon OID	3300004806 Open in IMG/M
Scaffold ID	Ga0007854_10003072 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300004806 Open in IMG/M

Scaffold ID

Ga0007854_10003072 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10196
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

10196

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F040983	Metagenome	160	N
F042691	Metagenome	157	N
F044277	Metagenome	154	N
F052342	Metagenome	142	N
F053011	Metagenome	141	N
F086512	Metagenome	110	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0007854_1000307210	F044277	GAG	MQNLIFHISLPKGIKLVNGATLMKDVTFDFISQITPYYSTIDMVRLAAGPTLKKLSDITIACQIYRSSNGADLITAARVPLSGLQHTRLIGSRLQYVTALASRDLMLNVVSLLGPGAHVLANFSVDRKADNKQRLAEFEESLKLYEVVLRSGGRVMPGGRPDFHFAAKGVLDWAERTPARTWFANGMGANASSMDPGSPTGGRGKPIKFFASPTCSPPMSSMRIGVYQPGFPVSQFYPYAMGQ*
Ga0007854_100030722	F052342	AGGAG	MQVFFARWPSGRKVKWRSLTWAEFKKFDRQLDYDCPASVYCDVYRAVVLDGPPLDGAPVYQAPAGLVEWIARALLDSNPFNGEYKDIKRALEMKRIELKSSWLNSAKSIIAGIFRYTFEEIEQWDAEMFFERLASAEFVSGRKLEPGDPDKLDAQHPGKKPGHPEGPPKPAKRELSPAQQKVVNRVVNSRK*
Ga0007854_100030723	F086512	AGGAG	MSDQIKEQPQITPFEFLLTFPEAPSLEQIEQWKQQAPGARLRIWHSTDGKRVYVLRAIGGQELGQLQASLPPNIPPEKVQAEVQILLAIRCCVWTSSTIDHKLSDLALKGAGAGLPQTLQEIIYQLSDYMDPMDINRFSADL*
Ga0007854_100030724	F042691	N/A	MAPTASSNAVQQPPAPGSATPAAANAQNTPGGIVIPSLAPSYEWIYPNSTDGKYFTATQAQMYIGNLFIDELVNLQFAYQGNRIPMFGYCSRSADAFGTGRLLVQGQIAINFVTEGYLYTVLKEFSKIYTQPVQASATGQAGAQIASLVQQSQQITNAMQGALSPSATASYQAQLNIISQQIQSLAAQGGPDAINAAKQSATVQSDTPNAIVLNIPFDIHCELTGAGRTVERILRNCLLISNEQVYDQSGQTLLDCYGFVARSAN*
Ga0007854_100030728	F053011	AGGAG	MSAITRPSSILPPLRSSKPAADINGFFQIVGQALAEFIKTEGAPEGTVPVYVEAFPKERLSEPDTAFDVILFHVVSGEMAPTSNDGATVPRSPMLRNVARIPSQAGYNLAQYGWWENYTVEFEVWSKSNSVANSLAVWFHRFLIRYAYYYKFFEAFGVQQFKFAGRQEDKSDEKENQELQIRRLRYSFRLEFLDTFTERQLTDLTLNFKIKRDVQTVELDTAQQHNAEHERFRFPVSNPVYVAD*
Ga0007854_100030729	F040983	GGAG	VDFYRDISATIDLREELHSVIHGSEEIVGQGRTVILRRMTNTTCPGCWDPKTGGSIRPNCRYCQGEGWQFYETQEIMALYRGVAPVYKPGVLATGEYPQNAMGYTDQNRCTAYVEVFRDDGSQVYPDYERYTLQTAEAYDKLYETKVDPEGNPVTDSSGRFTRTVKWKVLSVVPTFGDNGRIEFFELGLEKENV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0007854_10003072

Overview

Ecosystem & Geography

Associated Families

Sequences