NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007854_10011287

Scaffold Ga0007854_10011287


Overview

Basic Information
Taxon OID3300004806 Open in IMG/M
Scaffold IDGa0007854_10011287 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug08
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5043
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. L46(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041558Metagenome159N
F042700Metagenome157N
F071899Metagenome121N
F104335Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0007854_1001128710F104335GAGGMAFWEVTGTVVTEDNNAVTFRTFVPAEELVDTVNEGLDAIFEIENPEVYDEPETMTNGCFAMAQGLAAIEPPPAVNVHVEVHV*
Ga0007854_100112875F041558AGGAGMPPRKNQPKKATAKAKPAPVKPTAKTESVGAPAVVAPQALKFTAGDLVRKALQLRQQHTLNAPAATGEALGSSKGPKPTIVEFKVTLSDGTVLHATGKHADVMVRFSNECQEICQTQGLSAYNGPPLTHYTAEEWAAMNA*
Ga0007854_100112876F042700N/AMDAQKEAYKLLKEHGEQIRHNKHEAWRVNGHLITITKTKTDDRGWLNKLCEIRRCLKTPAEEVYRQARCNGKNRFSDAPAAQHSVSCAGPAATR*
Ga0007854_100112879F071899GAGGMQARVKLTPHIIARLIVGKPVTVNLPAGTSSLSLVTEGKFHEFLRAFHAPEEFEPETSHTEVIGLFDLIFGSH*
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