NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0007809_10056384

Scaffold Ga0007809_10056384


Overview

Basic Information
Taxon OID3300004807 Open in IMG/M
Scaffold IDGa0007809_10056384 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug07
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1266
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008351Metagenome / Metatranscriptome334Y
F018161Metagenome / Metatranscriptome236N

Sequences

Protein IDFamilyRBSSequence
Ga0007809_100563841F008351N/AMNSDQETELPEMCSEEPVHTVKESVEKLFSLINTEFSRPSVPDEEEDFSLLKQICEAKANILKDNPFWSVFDDTTLLSNRALGRLDWLDAEGQWDGAKNIENYKVIKEALRDLREFNPNWKLEEQEVTRRVMCSYCGTVKSVLEKEEVPLGNNPEKQKTDFL*
Ga0007809_100563842F018161AGGAMSELESKPDYSARQQVVRKIYKVLSRINCIPPFEDTINFRHLQRLHELMRELKSLDPEYPVTDVVQTSELNILKNLDRIQTTRSWDDAGNKLVYINIQGEISKIRKFHPDWDVDLDYIYRYHICRCLRCKSEGFLCTQYVLDSSNEISSPQSDTSEEGKPFPALNSKQ*
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