Scaffold Ga0007757_10905678

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0007757_10905678

Scaffold Ga0007757_10905678

Overview

Basic Information
Taxon OID	3300004810 Open in IMG/M
Scaffold ID	Ga0007757_10905678 Open in IMG/M
Source Dataset Name	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	940
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Spumella → Spumella elongata	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F041782	Metatranscriptome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0007757_109056781	F041782	N/A	LDFISIPWMDIIMEHNRHHNSTFDLLNHNEFGWDPANWLYTLQEWTMDWRSWFTCLLLPFWHMAGANDTGFLFACLWWLNFPDAGPGGKCDKGFYSKWLPVRLKHLCFLACIWGSTWLLGSIGLGRPLSEGWRFVLTVSLGFRMGFATAWIFIANINHSHTWNEFLATDPERSWPMLHNFMAFCLGGKHRWNEMLFHDVHHMCPGRIGAMSQRGRFHGWQKVHDACVELLARGLWVSEDADTKMVEHQKRRSLVMKSRK*

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