NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068515_102930

Scaffold Ga0068515_102930


Overview

Basic Information
Taxon OID3300004829 Open in IMG/M
Scaffold IDGa0068515_102930 Open in IMG/M
Source Dataset NameMarine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2204
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameSouth Korea: Pohang-si, Gyeongsangbuk-do
CoordinatesLat. (o)36.03776Long. (o)129.386Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004419Metagenome439Y
F060347Metagenome133Y
F093221Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0068515_1029303F004419GAGGMASYRTREGAITAADSFTALDSLYGQSTSSSVQVPAGTSAIVGIMASIATDSATNGAATFSMQLTGDGLTEQQTITIGSQGVDGTPASNGMTNMPFALDVAIPVTASNQVSIAVAMDVDVGSAQAAVTLVFA*
Ga0068515_1029304F060347AGGAMDRKRKAYAPFSQTSEAGVAQTPVEGYIDVNQTIYPIVNTGVVNEKGTWTGVRSSDTEFFGITKHVAVANGGVTLSPDTGDLNFIDMTGFNDLQFAIKPTNGGNCAIEAVMGPDTNRYANLNPVNSGASLAGLSAADSTSSNNQSMNVLFKDTTEALTADVWNIYLIQDRLKGQKLMQLKITNNSGGESTIEVAFMRLV*
Ga0068515_1029307F093221AGGMKIVELLAIPIGFALVRSIAKSVKDEPAPTTILPKQPGFTLGPAAASMDIAPLIPKGAFKITPTQLEAFTPDRKVTIPTFDPTLPIAKPIKEGKIKKFGTGVSL
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