Scaffold Ga0068515_103797

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068515_103797

Scaffold Ga0068515_103797

Overview

Basic Information
Taxon OID	3300004829 Open in IMG/M
Scaffold ID	Ga0068515_103797 Open in IMG/M
Source Dataset Name	Marine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1943
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location Name	South Korea: Pohang-si, Gyeongsangbuk-do
Coordinates	Lat. (^o)	36.03776	Long. (^o)	129.386	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017252	Metagenome	242	Y
F060453	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068515_1037972	F060453	N/A	MIISVAFKLKTGKTVNKVLAGAGIVALGTLVLNAVSPGLMQGSLGKVILPAVSFGVGGLESVAGAVVTEFAGHASGARALDNTLTESL*
Ga0068515_1037974	F017252	N/A	MPQVIQGYLVNVKPSDTTAESTYVSDVVAAGAAATTIHYPSQYRSYAISAAIKNQDPGNACTFSVNGQPPISLGAGADQNINNQSIVSIQVTPGAGGTTDILAQVSPIYVSTEAQRFRTESG*

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