NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068515_108183

Scaffold Ga0068515_108183


Overview

Basic Information
Taxon OID3300004829 Open in IMG/M
Scaffold IDGa0068515_108183 Open in IMG/M
Source Dataset NameMarine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-EVs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1322
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameSouth Korea: Pohang-si, Gyeongsangbuk-do
CoordinatesLat. (o)36.03776Long. (o)129.386Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042384Metagenome158Y
F049043Metagenome147Y
F056677Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0068515_1081831F042384AGGAGMGLMPIYYTTTKLSGKRKSSVRERRLRDDHEKWLKTMGIDKPWKPKKEPLKLAAKKTERYQSVGDGIGNGFVK
Ga0068515_1081832F049043N/AMRFVQLVMEMKKDGHDPLAIAGCMLAGAVQMYQSELGFETTTELLDTIANGSADEDLDIDISIDKETIH*
Ga0068515_1081833F056677AGGAGMDVYRNQEREMKLAKKPLIVLEDELWQINQLSRLRKDLRNRKQRLERVIAVKRFALQKVQEKIAKEIDKQS*
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