NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068514_1024366

Scaffold Ga0068514_1024366


Overview

Basic Information
Taxon OID3300004941 Open in IMG/M
Scaffold IDGa0068514_1024366 Open in IMG/M
Source Dataset NameMarine water microbial communities from the Pohang Bay, Korea with extracellular vesicles - Pohang-0.2um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)687
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameSouth Korea: Pohang-si, Gyeongsangbuk-do
CoordinatesLat. (o)36.03776Long. (o)129.386Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002858Metagenome / Metatranscriptome525Y
F023856Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0068514_10243662F023856AGGAGMRCKACDRILEESELTRKDTHGDFLDLCGICLSATASAGVDTETMEYYQYEIFTEDKDYDTLY*
Ga0068514_10243663F002858AGGAGMLIDEKSIYEVTGGDYSVYCLGYTQARTVTNDIMRRDPWGGIPFVIRKDLELSLDDRGNVVMTKSTLDKILFIASDELPEGDD*

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