NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068513_1004235

Scaffold Ga0068513_1004235


Overview

Basic Information
Taxon OID3300004951 Open in IMG/M
Scaffold IDGa0068513_1004235 Open in IMG/M
Source Dataset NameMarine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1496
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameEast Sea, Korea
CoordinatesLat. (o)37.0Long. (o)131.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028966Metagenome190N
F044811Metagenome154N
F091572Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0068513_10042351F028966N/APYQNFSINETRTYGGVTYSFAPFAVSSGGGARGGERSSASLVAGTDAISVNLFAEAVQNRYMLEIKTVSLDPLTFADEALVASEIWRVASYDMDPTRVALKLTSPLDAVKAQVPRRTLSTALVGALPTSGALVVS*
Ga0068513_10042352F044811GGTGGMWHKWIGLPHKFRADPRKGVGADCLIMVWNVLEDANAPHPRLDPTWLDLAEWGRHRLLAQTYEELTIPLDAPEEYAVTLFSTARTIGIGVVVDGGLLHVHHRRGVQWMPLDRCKPLEFRKFK*
Ga0068513_10042353F091572AGGAMMLPSDRYLADILGLTEEQYRHFQIEVRKRAAEGPQPAVVAGLETATILAIANIVIGLGALVASALLKPATPQPGQAPGQPRQTQDTTDPIIRNSRFAPRYGFDSQQDIATLGSIIPIVYAKRELISGDYYGGIRINMPMLWNQILSLGGGQMLRGVFLLGEGTVSSIDATGFAIGSNTLQGYVFDNTSATEQGARVTVYFSPDGGRIAGTDRVLGRTEANDDGSSGSSDVFQVYWNGQQ
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