NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068513_1036282

Scaffold Ga0068513_1036282


Overview

Basic Information
Taxon OID3300004951 Open in IMG/M
Scaffold IDGa0068513_1036282 Open in IMG/M
Source Dataset NameMarine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-EVs
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)541
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water → Marine And Wastewater Microbial Communities From Korea, With Extracellular Vesicles

Source Dataset Sampling Location
Location NameEast Sea, Korea
CoordinatesLat. (o)37.0Long. (o)131.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042384Metagenome158Y
F049043Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0068513_10362821F042384AGGAGMGLMPVYYTTTKLSGKRKSSVRNQRLNVEHEKWLRSIGIDKPWKPKKEVLKISAKKTERYQSVGNGIGNGFVKTTSAISGDYIVGQAYNKGNLVVLSKE
Ga0068513_10362822F049043N/AEMHKQMFLLVNLLKKDGHDPLAIAGCMLAGAVQIYQAELGEDTAFQLLDQIANGGDDDFDIDESVDKETIH*

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