NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071351_1007799

Scaffold Ga0071351_1007799


Overview

Basic Information
Taxon OID3300005044 Open in IMG/M
Scaffold IDGa0071351_1007799 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2927
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.236Alt. (m)Depth (m)2.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046173Metagenome / Metatranscriptome151N
F047014Metagenome / Metatranscriptome150Y
F057882Metagenome / Metatranscriptome135N
F073069Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0071351_10077994F057882N/AMSCKNNLKEFDHPEYGILDPAQVGELRDELTRCFIDYIGGLSNHIKEKETLDIKDRTTRFHFIRVCTIIKDLNEIDPGWCLRYFEPDDECLKIKLHDCKCCYHTCQNSDKVTQSPKSNSNKSSQVKDKESTQE*
Ga0071351_10077995F047014N/AMSFQVNEARDQWIRYLINLTEVWGKIIEAKKGKEAEHYCAKIVKIIQKLKKLDQQWHLKNSVSERNLIPIQYNNQSNNYTLQGA*
Ga0071351_10077996F073069AGAAGMTSKDTVLAKREVGIKEITENIKKRPNLPYGERKTEITKSLFLERTNKEVKQLKFKTALYLTELERGDEEVKEISNYITTHYLDEKSNTTSKDSEIKNINIFQEKLKKITDSIAKIAREKVEVANKQLNKDMSKETRSILKENFILMYEINIRLVDLKLMYEYIITKMISAEITEGMLTEARRRKWTRFY*
Ga0071351_10077997F046173N/AEIENYKSSDHDKMSKRINYAAKSPALDTVLNNIFLKTAMINLELKYYYEEVIGVSKYILEQYLTGKSIGVQLYIKEINTFYKEKPIVGLNKLKDTIENDIPIKISEIQETHQRIRKDQSKLSKMKQDPRYNNMQQWGIQLSLERVIEINSKLMNLTKLLNYIKEKQEEQE*
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