Basic Information | |
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Taxon OID | 3300005044 Open in IMG/M |
Scaffold ID | Ga0071351_1007799 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2927 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.236 | Alt. (m) | Depth (m) | 2.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F046173 | Metagenome / Metatranscriptome | 151 | N |
F047014 | Metagenome / Metatranscriptome | 150 | Y |
F057882 | Metagenome / Metatranscriptome | 135 | N |
F073069 | Metagenome / Metatranscriptome | 120 | N |
Protein ID | Family | RBS | Sequence |
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Ga0071351_10077994 | F057882 | N/A | MSCKNNLKEFDHPEYGILDPAQVGELRDELTRCFIDYIGGLSNHIKEKETLDIKDRTTRFHFIRVCTIIKDLNEIDPGWCLRYFEPDDECLKIKLHDCKCCYHTCQNSDKVTQSPKSNSNKSSQVKDKESTQE* |
Ga0071351_10077995 | F047014 | N/A | MSFQVNEARDQWIRYLINLTEVWGKIIEAKKGKEAEHYCAKIVKIIQKLKKLDQQWHLKNSVSERNLIPIQYNNQSNNYTLQGA* |
Ga0071351_10077996 | F073069 | AGAAG | MTSKDTVLAKREVGIKEITENIKKRPNLPYGERKTEITKSLFLERTNKEVKQLKFKTALYLTELERGDEEVKEISNYITTHYLDEKSNTTSKDSEIKNINIFQEKLKKITDSIAKIAREKVEVANKQLNKDMSKETRSILKENFILMYEINIRLVDLKLMYEYIITKMISAEITEGMLTEARRRKWTRFY* |
Ga0071351_10077997 | F046173 | N/A | EIENYKSSDHDKMSKRINYAAKSPALDTVLNNIFLKTAMINLELKYYYEEVIGVSKYILEQYLTGKSIGVQLYIKEINTFYKEKPIVGLNKLKDTIENDIPIKISEIQETHQRIRKDQSKLSKMKQDPRYNNMQQWGIQLSLERVIEINSKLMNLTKLLNYIKEKQEEQE* |
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