NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071351_1010253

Scaffold Ga0071351_1010253


Overview

Basic Information
Taxon OID3300005044 Open in IMG/M
Scaffold IDGa0071351_1010253 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2415
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.236Alt. (m)Depth (m)2.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064384Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0071351_10102532F064384AGGAGGLEPIPRGDLPSQDEIKGILHELARFNFFKRELPTFPVSFPQKAPTQKPFDVYHVPSGILTPRDLEYKNERNVPIPPRDDQTSALMQLLTCGHVKPFRRDSTMIFVKRGQWVLMDMNTPGFEVENCAVHFADIPREGVLHIAREYANTTFKSFRDGKSGIPSLPERRHANKVFNLF*

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