NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071351_1015868

Scaffold Ga0071351_1015868


Overview

Basic Information
Taxon OID3300005044 Open in IMG/M
Scaffold IDGa0071351_1015868 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1766
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.236Alt. (m)Depth (m)2.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027112Metagenome / Metatranscriptome195N
F031358Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0071351_10158681F031358AGGMLVLDRTDTRGSPVGTPTTDRIDIRDSPVGTPTIDRIDIRGNPAEISLGLDTIKGHPVGDSQHLDSGLHLEIGADRGLTIDHSLNPLVGQGHPDTTPIRDKVGHPTGQTVQTGTAPCPPGTPTLS*
Ga0071351_10158683F027112N/AVQGGQGIPSGNFFKKLGEFSRDDSLLEYSTPERSPPMQGNPEIKNSAELRHPTNETEPDQVSQVSGHQIPAMGHDSPAFQAEINEKIHDKNKLDFESEDSVELNSYKFPRPRFYNPNLYQSERPMDTFELLSDIAWHVGPKERPLTYQDFLEETLRKSIKPKKAKAAVLNSIETDPVYLKGINISIDKKKMVALMDTGSTHNLLAYDVFVTLQDKTFTPVNMDMKVAGSTLSNNIVGKAQLNTVFETTTGTVVLPLTYLVAHKLNGYHSIIGAQMLTNPRMIKASTPFHVHLNEDYKNAVIPLHSITKPPSFNSNQVNDVEDNPADTIDEEIIQEHVVIDSTKLNETFSHKDCEIN
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