NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0071351_1035938

Scaffold Ga0071351_1035938


Overview

Basic Information
Taxon OID3300005044 Open in IMG/M
Scaffold IDGa0071351_1035938 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0048
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)986
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.236Alt. (m)Depth (m)2.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039102Metagenome / Metatranscriptome164N
F088787Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0071351_10359381F088787N/ARGSDFIIHGLETLDEQLDIIATRIDTENKTEEILKNIRKGFSIIDDIILYATTFINEANKAKVEKFRGFISDLLDFAKTNIAKTLVIVRKLRARSLLSLIPLTKDLIMEQKHIKKLVSSSNLEQVKELLKEYRRTIRRRVSRRYSI*
Ga0071351_10359382F039102N/AMNKDQEKERLIRNLFKAIDNLDSTESKETISQAATRIYHLKREIVKIDPTWRVRDPYNYYVHRILSLLDGIDTRENPNVHNNQELYLKLFHETKMIRKTNQSWRLNVPKLVEFMTETSKVTHSDKIESMETEEVPKPSFYN*
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